PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK25812.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 474aa    MW: 53872 Da    PI: 4.6121
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK25812.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.85.5e-33581961128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWkat 86 
                lp+G++F+P+d+e++++ L +kv +++      +  +e+i++vd    i++v+P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++    + +W++t
  PK25812.1  58 LPRGVKFDPSDQEIIWH-LLAKVGEDNlkphpfI--TEFIPTVDkedgICYVHPQKLP-GVKKDGSVAHFFHRAIKAYNTGTRKRRKISdgdcDVRWHKT 153
                799************66.5556665554665332..334555544556**********.677788899******************9883344456**** PP

        NAM  87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                g++k+v   +g + g+kk++v+y   +r  k+ekt+Wvmh+y+l
  PK25812.1 154 GRTKPVNL-DGVQRGCKKIMVLYmsVARGGKAEKTNWVMHQYHL 196
                ********.99************4434778888*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-3943215IPR003441NAC domain
PROSITE profilePS5100531.40758215IPR003441NAC domain
PfamPF023654.1E-1459196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010332Biological Processresponse to gamma radiation
GO:0040020Biological Processregulation of meiotic nuclear division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAGPSWLVDS NRIATKIKSA SSNHDLEITK WKSNPTRACP NCQYVIDNTE VAQEWPGLPR  60
GVKFDPSDQE IIWHLLAKVG EDNLKPHPFI TEFIPTVDKE DGICYVHPQK LPGVKKDGSV  120
AHFFHRAIKA YNTGTRKRRK ISDGDCDVRW HKTGRTKPVN LDGVQRGCKK IMVLYMSVAR  180
GGKAEKTNWV MHQYHLGTGE DEKDGEYVIS KIFYQQHQVK PCDKIDQEIS ETNDVVIPKV  240
DPVTPKSVTP DPPRGERLQS DIEPGPDTTV ACTDPFAKYA DIGYLEDDDI LIECEMTGHR  300
DQPEEENLAE KVNNNEYLMD GILIECERTG HHYQPEEEHQ AEEVNNNEEI EENTDNILQC  360
NPEDSKWWDS ESQNLLDSQQ LVEGLSLCDD LLQSQSPNRY GDAHEIDKQQ KDKPKLADYA  420
RLGPDHLKKD IEECQNLVLD PANIYLDTPP EFRLSQLDFG SQDSFIPWGG KVAD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895658.10.0PREDICTED: NAC domain-containing protein 8-like
RefseqXP_015895659.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-171NAC8_ARATH; NAC domain-containing protein 8
TrEMBLA0A060A6610.0A0A060A661_BOENI; NAC domain-containing protein
STRINGVIT_01s0011g02990.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56623354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-159NAC family protein